So I just exported my Sweden Focus mod and everything was fine, but after I edited the ideologies and changed the government the countries all changed colors for some reason and don't know what to do. Please help.

Hey I just found the solution. When you export the mod, you need to go into the common files and delete the Colors File

The colours file is used to tell what colour the country should be.

If you haven't set a colour for your country in the Misc section of the country editor, then it will export as black by default.